Package index • gtsummary

Data Summary Tables

Standard Summary Tables

tbl_summary(): Summary table

add_p(<tbl_summary>): Add p-values

add_q(): Add multiple comparison adjustment

add_overall(): Add overall column

add_difference(<tbl_summary>): Add differences between groups

add_n(<tbl_summary>) add_n(<tbl_svysummary>) add_n(<tbl_likert>): Add column with N

add_ci(): Add CI Column

add_stat_label() questioning: Add statistic labels

add_stat(): Add a custom statistic

add_variable_group_header(): Variable Group Header

separate_p_footnotes() questioning: Create footnotes for individual p-values

Cross Tables

tbl_cross(): Cross table

add_p(<tbl_cross>): Add p-value

Continuous Variable Summary

tbl_continuous(): Summarize continuous variable

add_overall(): Add overall column

add_p(<tbl_continuous>): Add p-values

add_stat(): Add a custom statistic

Wide Summary Tables

tbl_wide_summary() experimental: Wide summary table

Hierarchical Summary Tables

tbl_hierarchical() tbl_hierarchical_count() experimental: Hierarchical Table

sort_hierarchical() experimental: Sort Hierarchical Tables

filter_hierarchical() experimental: Filter Hierarchical Tables

add_overall(): Add overall column

Likert Summary Tables

tbl_likert() experimental: Likert Summary

add_n(<tbl_summary>) add_n(<tbl_svysummary>) add_n(<tbl_likert>): Add column with N

Time-to-event Summary Tables

tbl_survfit(): Survival table

add_p(<tbl_survfit>): Add p-value

add_n(<tbl_survfit>): Add N

add_nevent(<tbl_survfit>): Add event N

add_q(): Add multiple comparison adjustment

Survey Design Summary Tables

tbl_svysummary(): Create a table of summary statistics from a survey object

add_p(<tbl_svysummary>): Add p-values

add_q(): Add multiple comparison adjustment

add_overall(): Add overall column

add_difference(<tbl_svysummary>): Add differences between groups

add_ci(<tbl_svysummary>): Add CI Column

add_n(<tbl_summary>) add_n(<tbl_svysummary>) add_n(<tbl_likert>): Add column with N

add_stat_label() questioning: Add statistic labels

add_stat(): Add a custom statistic

separate_p_footnotes() questioning: Create footnotes for individual p-values

Custom Summary Tables

tbl_custom_summary() experimental: Create a table of summary statistics using a custom summary function

add_overall(): Add overall column

proportion_summary() experimental: Summarize a proportion

ratio_summary() experimental: Summarize the ratio of two variables

Regression Model Summary Tables

tbl_regression(): Regression model summary

tbl_uvregression(): Univariable regression model summary

add_global_p(): Add the global p-values

add_n(<tbl_regression>) add_n(<tbl_uvregression>): Add N to regression table

add_nevent(): Add event N

combine_terms(): Combine terms

add_glance_table() add_glance_source_note(): Add model statistics

add_q(): Add multiple comparison adjustment

add_significance_stars(): Add significance stars

add_vif(): Add Variance Inflation Factor

plot(<tbl_regression>) plot(<tbl_uvregression>): Plot Regression Coefficients

Inline Reporting

inline_text(<tbl_summary>) inline_text(<tbl_svysummary>): Report statistics from summary tables inline

inline_text(<tbl_regression>): Report statistics from regression summary tables inline

inline_text(<tbl_uvregression>): Report statistics from regression summary tables inline

inline_text(<tbl_survfit>): Report statistics from survfit tables inline

inline_text(<tbl_cross>): Report statistics from cross table inline

inline_text(<tbl_continuous>): Report statistics from summary tables inline

inline_text(<gtsummary>): Report statistics from summary tables inline

Output Types

as_gt(): Convert gtsummary object to gt

as_flex_table(): Convert gtsummary object to a flextable object

as_kable(): Convert gtsummary object to a kable object

as_kable_extra(): Convert gtsummary object to a kableExtra object

as_hux_table() as_hux_xlsx(): Convert gtsummary object to a huxtable object

as_tibble(<gtsummary>) as.data.frame(<gtsummary>): Convert gtsummary object to a tibble

Other Functions

Merge, Stack, Stratify, or Split Summary Tables

tbl_merge(): Merge tables

tbl_stack(): Stack tables

tbl_strata() tbl_strata2(): Stratified gtsummary tables

tbl_strata_nested_stack(): Stratified Nested Stacking

tbl_split() print(<tbl_split>) experimental: Split gtsummary table

tbl_butcher(): Butcher table

Style Summary Tables

modify_header() modify_spanning_header() remove_spanning_header() show_header_names(): Modify column headers, footnotes, and spanning headers

modify_footnote_header() modify_footnote_body() modify_footnote_spanning_header() remove_footnote_header() remove_footnote_body() remove_footnote_spanning_header(): Modify Footnotes

modify_source_note() remove_source_note(): Modify source note

modify_abbreviation() remove_abbreviation(): Modify Abbreviations

modify_caption(): Modify table caption

bold_labels() italicize_labels() bold_levels() italicize_levels(): Bold or Italicize

bold_p(): Bold significant p-values

sort_p() filter_p(): Sort/filter by p-values

remove_row_type(): Remove rows

Style/Format Numeric Vectors

style_percent(): Style percentages

style_pvalue(): Style p-values

style_sigfig(): Style significant figure-like rounding

style_ratio(): Style ratios

style_number(): Style numbers

label_style_number() label_style_sigfig() label_style_pvalue() label_style_ratio() label_style_percent(): Style Functions

Themes

set_gtsummary_theme() reset_gtsummary_theme() get_gtsummary_theme() with_gtsummary_theme() check_gtsummary_theme(): Set gtsummary theme

theme_gtsummary_journal() theme_gtsummary_compact() theme_gtsummary_printer() theme_gtsummary_language() theme_gtsummary_continuous2() theme_gtsummary_mean_sd() theme_gtsummary_eda(): Available gtsummary themes

Advanced modifiers

modify_table_body(): Modify Table Body

modify_bold() remove_bold() modify_italic() remove_italic(): Modify Bold and Italic

modify_column_hide() modify_column_unhide(): Modify hidden columns

modify_column_alignment(): Modify column alignment

modify_fmt_fun(): Modify formatting functions

modify_post_fmt_fun() experimental: Modify post formatting

modify_column_merge() remove_column_merge(): Modify Column Merging

modify_column_indent(): Modify column indentation

modify_missing_symbol(): Modify Missing Substitution

Select Helpers

all_continuous() all_continuous2() all_categorical() all_dichotomous() all_tests() all_intercepts() all_interaction() all_contrasts() all_stat_cols(): Select helper functions

Custom Tidiers

tidy_standardize() tidy_bootstrap() tidy_robust() pool_and_tidy_mice() tidy_gam() tidy_wald_test(): Custom tidiers

ARD Constructors

tbl_ard_continuous() experimental: Summarize continuous variable

tbl_ard_hierarchical() experimental: ARD Hierarchical Table

tbl_ard_summary() experimental: ARD summary table

tbl_ard_wide_summary() experimental: Wide ARD summary table

add_overall(<tbl_ard_summary>): ARD add overall column

add_stat_label() questioning: Add statistic labels

gather_ard(): Extract ARDs

Construction Helpers

as_gtsummary(): Create gtsummary table

brdg_continuous(): Continuous Summary Table Bridges

brdg_hierarchical() pier_summary_hierarchical(): Hierarchy table bridge

brdg_summary() pier_summary_dichotomous() pier_summary_categorical() pier_summary_continuous2() pier_summary_continuous() pier_summary_missing_row(): Summary table bridge

brdg_wide_summary(): Wide summary table bridge

assign_summary_digits(): Assign Default Digits

assign_summary_type(): Assign Default Summary Type

assign_tests(): Assign Test

Data

trial: Results from a simulated study of two chemotherapy agents